BioNetGen

BioNetGen is software designed for modular, structure-based modeling of biochemical reaction networks. It can be applied to many other types of modeling as well. It provides a simple, graph-based syntax that lets users build reaction models out of structured objects that can bind and undergo modification.

Contents:

• Installation
  • Installing under VS Code
• VS Code BNGL extension
  • Usage
  • For Developers
• PyBioNetGen - A lightweight BioNetGen CLI
  • Atomizer

Indices and tables

• Index

• Module Index

• Search Page